PSAMM API¶
psamm.balancecheck
– check balance of charge and formulapsamm.bayesian
– Bayesian Matching Functionspsamm.bayesian_util
– Bayesian Matching Utility Functionspsamm.command
– Command line interfacepsamm.database
– Reaction databasepsamm.datasource.context
– File system contextspsamm.datasource.entry
– Model entry representationspsamm.datasource.kegg
– KEGG data parserpsamm.datasource.modelseed
– ModelSEED data parserpsamm.datasource.native
– Native data format parserpsamm.datasource.reaction
– Parser for reactionspsamm.datasource.sbml
– SBML model parserpsamm.expression.affine
– Affine expressionspsamm.expression.boolean
– Boolean expressionspsamm.fastcore
– Fastcore (approximate consistent subset)psamm.fastgapfill
– FastGapFill algorithmpsamm.fluxanalysis
– Constraint-based reaction flux analysispsamm.fluxcoupling
– Flux coupling analysispsamm.formula
– Chemical compound formulapsamm.gapfill
– GapFind/GapFillpsamm.gapfilling
– Gap-filling functionspsamm.graph
– Graph Related Functionspsamm.importer
– Import Functionspsamm.lpsolver.cplex
– CPLEX LP solverpsamm.lpsolver.generic
– Generic linear programming solverpsamm.lpsolver.glpk
– GLPK LP solverpsamm.lpsolver.gurobi
– Gurobi LP solverpsamm.lpsolver.lp
– Linear programming problemspsamm.lpsolver.qsoptex
– QSopt_ex LP solverpsamm.manual_curation
– Model Mapping Curationpsamm.mapmaker
– Mapmaker Functionspsamm.massconsistency
– Mass consistency checkpsamm.metabolicmodel
– Metabolic model representationpsamm.moma
– Minimization of metabolic adjustmentspsamm.randomsparse
– Find a random minimal network of model reactionspsamm.reaction
– Reaction equations and compoundspsamm.translate_id
– ID Translation Functionspsamm.util
– Internal utilities