psamm.datasource.modelseed
– ModelSEED data parser¶
Module related to loading ModelSEED database files.
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class
psamm.datasource.modelseed.
CompoundEntry
(id, names, formula, filemark=None)¶ Representation of entry in a ModelSEED compound table
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exception
psamm.datasource.modelseed.
ParseError
¶ Exception used to signal errors while parsing
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psamm.datasource.modelseed.
decode_name
(s)¶ Decode names in ModelSEED files
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psamm.datasource.modelseed.
parse_compound_file
(f, context=None)¶ Iterate over the compound entries in the given file